PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6NG235200.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 390aa    MW: 41941.9 Da    PI: 6.107
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6NG235200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH543.1e-17231277455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           hn  ErrRRdriN+++  L+el+P++      K +Ka+iL +++eY+ksLq
  Pavir.6NG235200.1.p 231 VHNLSERRRRDRINEKMRALQELIPHC-----NKTDKASILDETIEYLKSLQ 277
                          6*************************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.66E-18223281No hitNo description
SuperFamilySSF474593.4E-20225286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.482227276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-21231281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-14231277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-17233282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MDGNARPAAN QKKPIVPDDD LVELLWHNGS VVAHPQAHQR PEPSDRPGSS GLTGEETAAW  60
FPDTLDDAFE KDLYTQLWYS SIVDAAPHHG DTLPGPSSPP PPPPPPELAH PVTPPVGSGG  120
VESSWAGDIC STFCGSNQVP RMPAGVNRGE DASLQSEVPH GAGAGTSSSG GSGSNYGGSG  180
LPSDSGHVQK GKGMCRDDSD SRSEDAECEE TEETKSLRRC GTKRRTRAAE VHNLSERRRR  240
DRINEKMRAL QELIPHCNKT DKASILDETI EYLKSLQMQV QIIGMTSGMA PMMFPGAHQF  300
MSPMALGMNS ACITAAQGLS QMPRLPYMNL PLPNHIPLNS SPAMNPINSP SIANEMQNVH  360
LMEASNHFLH PRWRANIGTS GTRNPCLWT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1222239KRRTRAAEVHNLSERRRR
2235240ERRRRD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.420240.0leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004981539.10.0PREDICTED: transcription factor PIF4-like isoform X1
RefseqXP_004981540.10.0PREDICTED: transcription factor PIF4-like isoform X1
RefseqXP_012704121.10.0PREDICTED: transcription factor PIF4-like isoform X1
TrEMBLK4AAB20.0K4AAB2_SETIT; Uncharacterized protein
STRINGSi035818m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31743482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59060.14e-32phytochrome interacting factor 3-like 6